Microbial Community Ecology and Physiology

The paper introduces a Bayesian Personalized Ranking model to predict microbial substrate preferences and develops an agent that integrates this model with a growth model and LLM for autonomous microbial analysis.

This study examines bacterial community dynamics in paired residential sink P-traps over two months, showing that individual usage patterns significantly influence community structure and temporal stability.

The paper investigates eco-evolutionary dynamics in deep groundwater microbiomes by analyzing cross-feeding interactions and genome size relationships across different depths.

The paper assesses microbial hydrogen oxidation potential in the Aurora Vent Field using metagenomics, revealing diverse taxa with H2 oxidation capabilities and novel hydrogenase genes.

This study examines the microbiome of healthy and bleached drift macroalgae, identifying shifts in bacterial communities associated with host health status.

This study shows microbial communities converge on similar metabolic functions under controlled environmental conditions, revealing the role of both imposed and emergent environmental filters.

This study isolates and characterizes Thalassolituus haligoni, a non-cyanobacterial diazotroph, revealing its N2 fixation capabilities and growth preferences.

The paper compares bacterial communities in a Miyawaki forest and adjacent grassland to assess how vegetation structure and management influence soil microbial function and ecosystem services across seasons.

This study uses a meta-analysis of metagenomic and phylogenomic data to reveal previously unknown Hyphomicrobiales taxa in the phyllosphere and highlights limitations of 16S rRNA gene barcoding for their identification.

The paper analyzes planetary microbiome structure and gene flow across habitats using metagenomic data, identifying generalist microbes as key drivers of gene transfer.

This study uses dual transcriptomics to analyze interactions between microalgae and phycosphere bacteria, finding bacteria adapt to hosts while microalgae remain unaffected.

This study shows that habitat fragmentation increases bacterial community evenness and species coexistence by creating isolated microhabitats with varying taxa compositions.

The paper compares the spatio-temporal dynamics and composition of size-fractionated and unfractionated microbial communities in the Northwestern Atlantic, finding that de-fractionating samples before or after sequencing closely resembles unfractionated samples.

The paper surveys subseafloor microbial communities in the San Pedro Basin to establish a baseline for ecological and microbiological variation, supporting future monitoring and research.

This study analyzes metagenomic data from the Gulf of Mexico to show unique microbial diversity and the long-range effects of freshwater input.

This study evaluates how PCR bias affects microbial ecology analyses and provides guidance on selecting appropriate diversity metrics and applying bias correction.

This paper develops OxyMetaG, a tool that predicts aerobic and anaerobic bacterial proportions from metagenomic reads, showing its application in soils and human gut samples.

This study investigates how nutrient stress shapes interactions in a synthetic microbial community with Prymnesium parvum, showing B12 limitation drives mutualism and metabolic reprogramming.

The paper identifies vitamin B6 catabolites as interkingdom signals in marine microbiomes, showing they structure metabolite exchanges between phytoplankton and bacteria.

The paper examines microbial community reassembly in a meromictic lake after redox gradients collapse and recover, showing depth-specific functional shifts and persistent core taxa.

The paper examines how soil pH influences bacterial niche breadth and genomic traits across UK soils, finding that low pH soils host specialized bacteria with streamlined genomes.

The paper investigates community conservatism in microorganisms, finding it普遍存在 across environments and phyla, with specialized taxa showing stronger signals.

This study identifies widespread and diverse deep-sea chemoautotrophs beyond nitrifiers, revealing their genetic potential for carbon fixation and impact on the carbon cycle.

This study characterizes bacterial communities in sabkha ecosystems, showing that abiotic factors drive microbial structure and that halophilic core microbiomes are resilient and culturable.

This study analyzes global mangrove sediment microbiomes to show a conserved core and environmentally responsive periphery shaping their biogeography.

The paper analyzes microbial and microeukaryote communities in seagrass and bare sediment habitats to show how environmental gradients and habitat features shape benthic biodiversity.

The paper examines how resource competition between chitin degraders and GlcNAc exploiters influences community viability and growth dynamics through factors like GlcNAc liberation rates and diffusive loss.

This study shows wind-driven upwelling in Lake Ontario disrupts microbial community assembly by redistributing rare taxa and creating novel coastal communities with unique functional traits.

The paper introduces improved 16S rRNA V4 primers that enhance detection of underrepresented microbial lineages across diverse environments.

This study shows nutrient enrichment reduces bacterioplankton taxonomic diversity but connectivity can restore functional diversity in highly stressed freshwater communities.