A. Danchin

Computation of Antigenicity Predicts SARS-CoV-2 Vaccine Breakthrough Variants

This paper develops a computational model to predict SARS-CoV-2 variant antigenicity from sequence data, showing high accuracy in predicting neutralisation titre decreases for known variants and Omicron.

Biochemical and mathematical lessons from the evolution of the SARS-CoV-2 virus: paths for novel antiviral warfare

This paper analyzes the evolution of SARS-CoV-2 using probabilistic modeling to link viral genome composition to mutation patterns and host metabolism interactions.

Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli

This study expands the analysis of uncultured environmental Tenericutes using 840 genomes, revealing their functional patterns, evolutionary relationships with Bacilli, and potential roles in gut microbiome stability.

Hypothesis, analysis and synthesis: it's all Greek to me!

The paper analyzes the linguistic origins of scientific terms, showing Greek terms dominate PubMed and proposes new genomics terminology.