Author

A. Farrell

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Cancer Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

G. T. Marth· 2 shared A. H. Bild· 1 shared A. L. Cohen· 1 shared A. Vajdi Hoojghan· 1 shared C. Brooke· 1 shared D. Deryng· 1 shared D. F. Jenkins· 1 shared D. Makowski· 1 shared

Activity by Year

2019-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersCancer Biology

G. T. Marth

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Novel temporal and spatial patterns of metastatic colonization from rapid-autopsy tumor biopsies

X. Huang, Y. Qiao, S. W. Brady, R. E. Factor, E. Downs-Kelly, A. Farrell, J. A. McQuerry, G. Shrestha, D. F. Jenkins, W. E. Johnson, A. L. Cohen, A. H. Bild, G. T. Marth

This study uses rapid autopsy and whole genome sequencing to analyze metastatic evolution in a patient, identifying subclone incubators and four waves of metastatic expansion.

bioRxiv · Jun 3, 2021Cancer Biology

A global dataset for the projected impacts of climate change on four major crops

T. Hasegawa, H. Wakatsuki, H. Ju, S. Vyas, G. C. Nelson, A. Farrell, D. Deryng, F. Meza, D. Makowski

The paper compiles a global dataset of climate change impacts on four crops using existing studies and new literature, providing yield projections under different emission scenarios.

bioRxiv · May 27, 2021Plant Biology

The extracellular milieu of Toxoplasma-s lytic cycle drives lab-adaptation and promotes changes in lipid metabolism primarily driven by transcriptional reprogramming

V. A. Primo, Y. Rezvani, A. Farrell, A. Vajdi Hoojghan, G. T. Marth, K. Zarringhalam, M.-J. Gubbels

This study uses evolve and resequence to identify genetic changes in Toxoplasma gondii during lab-adaptation, revealing transcriptional reprogramming and lipid metabolism shifts.

bioRxiv · Mar 9, 2021 · PreprintMicrobiology

Coinfection of semi-infectious particles can contribute substantially to influenza infection dynamics

A. Farrell, C. Brooke, K. Koelle, R. Ke

The paper models the role of semi-infectious particles and coinfection in influenza dynamics, finding SIPs significantly contribute to viral load and co-infection is frequent during early infection.

bioRxiv · Feb 12, 2019 · PreprintMicrobiology