Author

A. Giess

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:variant calling· 3 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:cancer & tumor microenvironment· 1

Frequent Co-Authors

A. M. Flanagan· 2 shared F. Amary· 2 shared F. Muyas· 2 shared G. Elgar· 2 shared H. Elrick· 2 shared I. Cortes-Ciriano· 2 shared J. Espejo Valle-Inclan· 2 shared K. Trevers· 2 shared

Activity by Year

2017-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersCancer Biology

A. M. Flanagan

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

SAVANA: reliable analysis of somatic structural variants and copy number aberrations in clinical samples using long-read sequencing

H. Elrick, C. M. Sauer, J. Espejo Valle-Inclan, K. Trevers, M. Tanguy, S. Zumalave, S. De Noon, F. Muyas, R. Cascao, A. Afonso, F. Amary, R. Tirabosco, A. Giess, T. Freeman, A. Sosinsky, , I. Cortes-Ciriano

SAVANA improves detection of somatic structural variants and copy number aberrations in cancer using long-read sequencing with higher sensitivity and specificity than existing tools.

bioRxiv · Jul 25, 2024 · PreprintCancer Biology

Mechanisms underpinning osteosarcoma genome complexity and evolution

J. Espejo Valle-Inclan, S. De Noon, K. Trevers, H. Elrick, M. Tanguy, T. Butters, F. Muyas, F. Amary, R. Tirabosco, A. Giess, A. Sosinky, G. Elgar, A. M. Flanagan, I. Cortes-Ciriano

This study identifies chromothripsis and a novel LTA chromothripsis mechanism driving genome complexity and evolution in osteosarcoma, with prognostic implications for high-grade tumors.

bioRxiv · Dec 29, 2023 · PreprintCancer Biology

Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

J. van Aartsen, C. Moore, C. Parry, P. Turner, N. Phot, S. Mao, K. Suy, T. Davies, A. Giess, A. Sheppard, T. Peto, N. Day, D. Crook, A. Walker, N. Stoesser

The paper investigates ESC-R-EC and ESC-R-KP colonization in Cambodian children, identifies risk factors, and characterizes resistance gene diversity and genetic contexts.

bioRxiv · Aug 16, 2017Microbiology

REPARATION: Ribosome Profiling Assisted (Re-)Annotation of Bacterial genomes.

E. Ndah, V. Jonckheere, A. Giess, E. Valen, G. Menschaert, P. Van Damme

REPARATION uses ribosome profiling data to improve bacterial genome annotation by identifying novel ORFs and refining existing ones.

bioRxiv · May 2, 2017Microbiology