Author

A. Yudenko

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4 Biochemistry· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Assay:fluorescence / live-cell microscopy· 3 Research Focus:protein folding & dynamics· 3 Research Focus:cell type annotation· 2 Organism:bacteria (other)· 1 Research Focus:cell signaling & trafficking· 1 Approach:microscopy & imaging analysis· 1 Assay:protein structure· 1

Frequent Co-Authors

A. Remeeva· 4 shared I. Gushchin· 4 shared E. Kuznetsova· 3 shared O. Semenov· 3 shared V. Borshchevskiy· 3 shared V. V. Nazarenko· 3 shared A. Nikolaev· 2 shared I. M. Goncharov· 2 shared

Activity by Year

2021-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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4 shared papersBiophysics

A. Remeeva

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Two distinct mechanisms of flavoprotein spectral tuning revealed by low-temperature and time-dependent spectroscopy

A. Nikolaev, E. V. Tropina, K. N. Boldyrev, E. G. Maksimov, V. Borshchevskiy, A. Mishin, A. Yudenko, A. Kuzmin, E. Kuznetsova, O. Semenov, A. Remeeva, I. Gushchin

The paper uses spectroscopy and X-ray structures to reveal two distinct mechanisms by which flavin-binding proteins tune their fluorescence spectra.

bioRxiv · Jul 17, 2023Biophysics

Revealing the Oligomerization of Channelrhodopsin-2 in the Cell Membrane using Photo-Activated Localization Microscopy

E. Bestsennaia, I. Maslov, T. Balandin, A. Alekseev, A. Yudenko, A. A. Shamseye, D. Zabelskii, A. Baumann, C. Catapano, C. Karathanasis, V. Gordeliy, M. Heilemann, T. Gensch, V. Borshchevskiy

This study uses qPALM to show ChR2 predominantly forms dimers in the cell membrane, with disulfide bonds not essential for dimerization and partial monomerization observed at low concentrations.

bioRxiv · May 24, 2023 · PreprintBiophysics

luxA gene from Enhygromyxa salina encodes a functional homodimeric luciferase

A. Yudenko, S. V. Bazhenov, V. A. Aleksenko, I. M. Goncharov, O. Semenov, A. Remeeva, V. V. Nazarenko, E. Kuznetsova, V. V. Fomin, M. N. Konopleva, R. Al Ebrahim, N. N. Sluchanko, Y. Ryzhykau, Y. S. Semenov, A. Kuklin, , I. Gushchin

The study identifies EsLuxA from Enhygromyxa salina as a functional homodimeric luciferase that produces light in vitro and in vivo, suggesting a simplified evolutionary pathway for bioluminescence.

bioRxiv · Feb 27, 2023Biochemistry

Fine spectral tuning of a flavin-binding fluorescent protein for multicolor imaging

A. Nikolaev, A. Yudenko, A. Smolentseva, A. Bogorodskiy, F. Tsybrov, V. Borshchevskiy, S. Bukhalovich, V. V. Nazarenko, E. Kuznetsova, O. Semenov, A. Remeeva, I. Gushchin

The paper develops twenty-two finely tuned flavin-binding fluorescent proteins for multicolor imaging by modifying the chromophore's spectral properties.

bioRxiv · Dec 9, 2022Biophysics

Insights into the mechanisms of LOV domain color tuning from a set of high-resolution X-ray structures

A. Remeeva, V. V. Nazarenko, K. Kovalev, I. M. Goncharov, A. Yudenko, R. Astashkin, V. Gordeliy, I. Gushchin

The paper investigates how mutations of Gln148 in LOV domains affect their absorption spectra and structure, revealing blue shifts and pH sensitivity in certain variants.

bioRxiv · Feb 5, 2021Biophysics