Author
Bilkent University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
3 papers
Recent·Most cited
Erfan FarhangKia, Ahmet Arda Ceylan, M. Mert Gencturk…·A. Ercüment Çiçek
ExactCN improves copy number variation estimation from whole-exome sequencing data using deep learning, achieving better accuracy than existing methods.
Mehmet Alper Yılmaz, Ahmet Arda Ceylan, A. Ercüment Çiçek
CHALLENGER improves CNV detection in challenging genomic regions using short-read WGS data, achieving higher F1-scores and capturing CNVs typically requiring long reads.
Mehmet Alper Yılmaz, Ahmet Arda Ceylan, Gün Kaynar, A. Ercüment Çiçek
LYCEUM is a machine learning-based CNV caller for ancient DNA that improves detection accuracy in low-coverage samples by pre-training on high-quality data and fine-tuning on limited aDNA samples.