Author
University of California San Diego
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
4 papers
Recent·Most cited
Sergei A. Manakov, Alexander A. Shishkin, Brian A. Yee…·Eric L. Van Nostrand
This paper introduces chimeric eCLIP, a method to efficiently profile miRNA:mRNA interactions at scale, showing significant improvements in recovery and specificity.
Eric L. Van Nostrand, Sarah A. Barnhill, Alexander A. Shishkin…·Gene Wei-Ming Yeo
The paper uses a genome-wide CRISPR/Cas9 knockout screen to identify novel transporters involved in nanoparticle uptake, finding SLC18B1 mediates polymeric micellar nanoparticle uptake.
Sofia A. Quinodoz, Noah Ollikainen, Barbara Tabak…·Mitchell Guttman
The paper introduces SPRITE, a method for detecting higher-order DNA interactions, and shows that nuclear bodies act as inter-chromosomal hubs shaping 3D genome organization.
Jenny Chen, Alexander A. Shishkin, Xiaopeng Zhu…·Manuel Garber
The paper introduces a computational tool for lncRNA discovery and analysis, identifying two distinct classes of lncRNAs based on evolutionary patterns.