Author

Alfredo Velasco

University of Tulsa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Hani Z. GirgisiD· 2 shared Benjamin T. JamesiD· 1 shared V. Wells· 1 shared Zachary E. Reyes· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 4 mutual co-author links

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2 shared papersBioinformatics

Hani Z. GirgisORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJul 8, 2019

Look4TRs: A de-novo tool for detecting simple tandem repeats using self-supervised hidden Markov models.

Alfredo Velasco, Benjamin T. James, V. Wells, Hani Z. Girgis

Look4TRs detects microsatellites using self-supervised HMMs, outperforming existing tools across eight genomes with higher accuracy and fewer false positives.

13 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedSep 3, 2018

HebbPlot: An intelligent tool for learning and visualizing chromatin mark signatures

Hani Z. Girgis, Alfredo Velasco, Zachary E. Reyes

HebbPlot uses Hebb networks to learn and visualize chromatin mark signatures across 111 epigenomes, revealing distinct patterns for promoters, enhancers, and active genes.

3 citations

humanChIP-seq

𝕏 PostBluesky