Author

Artemii Bakulin

Weizmann Institute of Science

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Bioinformatics· 1

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Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:spatial transcriptomics· 1

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Boaz NadleriD· 1 shared Can ErgeniD· 1 shared Florian IngelfingeriD· 1 shared Giacomo CinnirellaiD· 1 shared Nathan LevyiD· 1 shared Nir YosefiD· 1 shared Pierre BoyeauiD· 1 shared

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Boaz NadlerORCID

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Recent·Most cited

BioinformaticsbioRxivPreprintJun 1, 2025

scVIVA: a probabilistic framework for representation of cells and their environments in spatial transcriptomics

Nathan Levy, Florian Ingelfinger, Artemii Bakulin…·Nir Yosef

scVIVA is a deep generative model that integrates cell-intrinsic and neighboring gene expression to produce embeddings and gene profiles, revealing spatially restricted tumor-promoting endothelial cells and niche-associated T cell states in breast cancer.

1 citation

humanspatial transcriptomics

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