Author

B. Vani

Birla Institute of Technology and Science, Pilani

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:drug response / drug discovery· 2 Research Focus:protein folding & dynamics· 2 Assay:protein structure· 2 Approach:graph neural network· 1 Approach:machine learning (classical)· 1 Approach:mechanistic / dynamical model· 1 Approach:statistical model· 1

Frequent Co-Authors

A. Antoszewski· 1 shared A. M. Watkins· 1 shared A. R. Dinner· 1 shared A. Tokmakoff· 1 shared C.-J. Feng· 1 shared D. Davidson· 1 shared D. Sommer· 1 shared E. H. Thiede· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBiophysics

A. Antoszewski

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Author profile →

4 papers

Recent·Most cited

Rapid generation of antibody conformational ensembles using machine learning

Pranav V Rao, D. Sommer, D. Davidson, R. G. Alberstein, J. Ludwiczak, J. Kleinhenz, B. Vani, E. Park, J. H. Lee, S. Izadi, J. R. Kiefer, R. Bonneau, S. P. Mahajan, A. M. Watkins, F. A. Dreyer

This paper introduces Cadense, a machine learning framework that generates antibody conformational ensembles from sequence, capturing dynamic properties and improving docking accuracy.

bioRxiv · Nov 9, 2026 · PreprintBioinformatics

Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention

Z. Smith, M. Strobel, B. Vani, P. Tiwary

GrASP identifies druggable protein binding sites using graph neural networks with attention, achieving state-of-the-art performance and high precision.

bioRxiv · Jul 25, 2023Biophysics

Insulin dissociates by diverse mechanisms of coupled unfolding and unbinding

A. Antoszewski, C.-J. Feng, B. Vani, E. H. Thiede, L. Hong, J. Weare, A. Tokmakoff, A. R. Dinner

This study uses molecular dynamics simulations to investigate insulin dimer dissociation mechanisms, revealing multipathway behavior with conformational selection and induced fit as limiting cases.

bioRxiv · Mar 16, 2020Biophysics

Analysis of seven putative Na+/H+ antiporters of Arthrospira platensis NIES-39 using transcription profiling and In-silico studies: an indication towards alkaline pH acclimation

Monika M. Jangir, B. Vani, Shibasish Chowdhury

The paper characterizes seven Na+/H+ antiporters in Arthrospira platensis NIES-39 using in-silico analysis and transcription profiling, showing their role in alkaline pH tolerance.

Physiology and Molecular Biology of Plants · Jul 24, 2019Peer-reviewedMolecular Biology