Author

C. Rougeux

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 6

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Approach:statistical model· 5 Research Focus:chromatin & epigenetic regulation· 3 Assay:DNA methylation· 3 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:multiple species· 2 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1

Frequent Co-Authors

L. Bernatchez· 6 shared M. Laporte· 4 shared E. Normandeau· 3 shared P.-A. Gagnaire· 3 shared C. Merot· 2 shared K. Praebel· 2 shared C. J. Venney· 1 shared C. Mérot· 1 shared

Activity by Year

2016-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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6 shared papersEvolutionary Biology

L. Bernatchez

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6 papers

Recent·Most cited

Epigenetic and genetic differentiation between Coregonus species pairs

C. J. Venney, C. Merot, E. Normandeau, C. Rougeux, M. Laporte, L. Bernatchez

The paper examines genetic and epigenetic differentiation between sympatric benthic-limnetic whitefish species pairs, finding evidence that DNA methylation contributes to mutagenesis and genetic divergence during speciation.

bioRxiv · Nov 18, 2022 · PreprintEvolutionary Biology

Genome assembly, structural variants, and genetic differentiation between Lake Whitefish young species pairs (Coregonus sp.) with long and short reads

C. Mérot, K. S. R. Stenløkk, C. Venney, M. Laporte, M. Moser, E. Normandeau, M. Àrnyasi, M. Kent, C. Rougeux, J. M. Flynn, S. Lien, L. Bernatchez

The paper assembles genomes and identifies structural variants in two Lake Whitefish species pairs using long and short reads, finding that SVs cover more genome than SNPs and are linked to transposable elements.

bioRxiv · Jan 15, 2022Evolutionary Biology

Genome-wide DNA methylation predicts environmentally-driven life history variation in a marine fish

H. Cayuela, C. Rougeux, M. Laporte, C. Merot, E. Normandeau, M. Leitwein, Y. Dorant, K. Praebel, E. Kenchington, M. Clement, P. Sirois, L. Bernatchez

This study shows that DNA methylation patterns differ between two life history strategies in capelin, suggesting epigenetic changes, not genetic differences, drive these variations.

bioRxiv · Jan 28, 2021 · PreprintEvolutionary Biology

The role of genomic vs. epigenomic variation in shaping patterns of convergent transcriptomic variation across continents in a young species complex

C. Rougeux, M. Laporte, P.-A. Gagnaire, L. Bernatchez

The paper quantifies the relative contribution of genomic and epigenomic variation to convergent gene expression differences in four whitefish species pairs across continents.

bioRxiv · Sep 30, 2019 · PreprintEvolutionary Biology

Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister-species complex.

C. Rougeux, P.-A. Gagnaire, K. Praebel, O. Seehausen, L. Bernatchez

The paper investigates convergent transcriptomic landscapes in limnetic and benthic whitefish species pairs across continents, finding shared genomic bases for differential gene expression under polygenic selection.

bioRxiv · Aug 5, 2019Evolutionary Biology

MODELING THE MULTIPLE FACETS OF SPECIATION-WITH-GENE-FLOW TOWARDS INFERRING THE DIVERGENCE HISTORY OF LAKE WHITEFISH SPECIES PAIRS (COREGONUS CLUPEAFORMIS).

C. Rougeux, L. Bernatchez, P.-A. Gagnaire

The paper models speciation-with-gene-flow in Lake Whitefish species pairs to infer divergence history and find recent asymmetrical secondary contact and heterogeneous genomic differentiation.

bioRxiv · Aug 10, 2016Evolutionary Biology