Digitalized organoids: integrated pipeline for 3D high-speed analysis of organoid structures using multilevel segmentation and cellular topology
H. T. Ong, E. Karatas, G. Grenci, F. Dilasser, S. B. M. Raffi, D. Blanc, T. E. Poquillon, E. Drimaracci, D. Mikec, C. Thiel, O. Ullrich, V. Racine, A. Beghin
This paper introduces a pipeline for 3D organoid analysis using multilevel segmentation and cellular topology to quantify morphology and topology changes under various stress conditions.
bioRxiv · Nov 8, 2023Cell Biology