Author

Carl Kingsford

Primary ORCID profile (0000-0002-0118-5516 · 47 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Carl KingsfordiD47 papers · Carnegie Mellon University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:human· 1 Assay:Ribo-seq· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Hao Wang· 1 shared Hiren Karathia· 1 shared Joel McManus· 1 shared Michelle Girvan· 1 shared Sridhar Hannenhalli· 1 shared

Activity by Year

2015-2016 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 4 mutual co-author links

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1 shared paperBioinformatics

Hao Wang

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJun 15, 2016

Isoform-level Ribosome Occupancy Estimation Guided by Transcript Abundance with Ribomap

Hao Wang, Joel McManus, Carl Kingsford

The paper introduces Ribomap, a method to improve ribosome occupancy estimation by assigning reads based on transcript abundance, leading to more accurate ribosome profiles.

DOI 10.1093/bioinformatics/btw085

Ribo-seqdeep learning

𝕏 PostBluesky

BioinformaticsbioRxivSep 17, 2015

A pathway-centric view of spatial proximity in the 3D nucleome across cell lines

Hiren Karathia, Carl Kingsford, Michelle Girvan, Sridhar Hannenhalli

The paper analyzes spatial proximity of genes in six human cell lines, finding context-specific pathway organization linked to gene function and pathway activity.

DOI 10.1038/srep39279

humanDNA methylation

𝕏 PostBluesky