Author

Chaitra Agrahar

Altos Labs

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:simulation· 1 Approach:statistical model· 1

Frequent Co-Authors

Carlos F. LopeziD· 1 shared Diego Acosta‐AlveariD· 1 shared Francesca ZappaiD· 1 shared Michael J. RustiD· 1 shared Mustafa OzeniD· 1 shared Simone BiancoiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 10 mutual co-author links

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1 shared paperSystems Biology

Carlos F. LopezORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintAug 5, 2026

Deep learning of dynamic signatures resolves mechanistic ambiguity in complex signaling networks

Mustafa Ozen, Chaitra Agrahar, Francesca Zappa…·Carlos F. Lopez

The paper introduces a deep learning framework to resolve mechanistic ambiguity in complex signaling networks by learning dynamic signatures from competing models.

DOI 10.64898/2026.08.04.742863

deep learningbenchmarking

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Systems BiologybioRxivPreprintApr 25, 2022

Optimizing Oscillators for Specific Tasks Predicts Preferred Biochemical Implementations

Chaitra Agrahar, Michael J. Rust

The paper identifies preferred biochemical implementations for oscillators by analyzing stability and cost, finding natural systems favor certain designs over artificial ones.

2 citations

statistical modelsimulation

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