Author

Chinmay Vaidya

Dartmouth College

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

F. W. KollingiD· 2 shared Leena AbdullahiD· 2 shared Margaret E. AckermaniD· 2 shared Yina H. HuangiD· 2 shared Aaron McKennaiD· 1 shared Francesco E. EmilianiiD· 1 shared Hannah Stuart· 1 shared Joshua J. ObariD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

F. W. KollingORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 2, 2026

RAD: A Read-structure Agnostic Demultiplexer for Single-Cell Long-Read Sequencing and Analysis

Chinmay Vaidya, Margaret C. Carpenter, Leena Abdullah…·Margaret E. Ackerman

RAD is a demultiplexer for single-cell long-read sequencing that improves speed and sensitivity over existing methods while supporting complex read structures.

1 citation

long-read sequencingspatial transcriptomics

𝕏 PostBluesky

ImmunologyImmunityPeer-reviewedFeb 27, 2025

Hierarchal single-cell lineage tracing reveals differential fate commitment of CD8 T-cell clones in response to acute infection.

Leena Abdullah, Francesco E. Emiliani, Chinmay Vaidya…·Yina H. Huang

This study uses single-cell lineage tracing to show that CD8 T-cell clones exhibit differential fate commitment during acute infection, with some clones adopting memory or effector biases over time.

18 citationstop 3%

mousescRNA-seq

𝕏 PostBluesky