Author

Chong Li

Southwest University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cancer Biology· 1 Genetics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Approach:statistical model· 4 Assay:whole-genome sequencing· 4 Organism:multiple species· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

André CorveloiD· 2 shared Charles LeeiD· 2 shared Christine R. BeckiD· 2 shared DongAhn YooiD· 2 shared Evan E. EichleriD· 2 shared Feyza YilmaziD· 2 shared Giuseppe NarzisiiD· 2 shared Hufsah AshrafiD· 2 shared

Activity by Year

2024-2026 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

André CorveloORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Pulmonary colonization of Candida albicans drives breast cancer lung metastasis via candidalysin

Zhongyi Ma, Lei Chen, Yike Fang, Feiyan Gao, Lihan Liu, Jin Wu, Hongdan Chen, Yueru Tian, Yuping Zhang, Xinlin Yang, Yumei Wang, Mengdi Ren, Yulan Liu, Lin Zhu, Changbin Chen, , Chong Li

This study shows that Candida albicans colonization in the lungs promotes breast cancer metastasis by activating mast cells and creating an immunosuppressive environment.

bioRxiv · Oct 28, 2026 · PreprintCancer Biology

The common evolution of fungicide persistence in cryptococcosis patients

Yuyan Xie, Weixin Ke, Xin Fan, Heping Xu, Wenzhao Wang, Zhen Zeng, Na Zhang, Haoran Ma, Zhongjie Tang, Huawei Zhu, Lei Jiang, Bo Zhu, Guohui Shi, Sihan Yang, Minling Yu, , Linqi Wang

The paper identifies common evolutionary events leading to fungicide persistence in Cryptococcus neoformans clinical isolates and shows ACO2 deficiency as a key predictor of high persistence.

bioRxiv · Aug 26, 2026 · PreprintMicrobiology

Multi-layered molecular regulation of complex traits in an advanced intercross line

Xiaoning Zhu, Chenghao Zhai, Chong Li, Rongrong Liu, Hongmei Mou, Yunfei Zhu, Wei Luo, Peng Chen, Hanyu Wu, Yuzhan Wang, Kai Shi, Mian Gong, Weijie Zheng, Jian Ji, Chenglong Luo, , Yuzhe Wang

The paper maps a multi-layered molecular QTL atlas in chicken to understand complex trait regulation across tissues and developmental stages.

bioRxiv · Aug 21, 2026 · PreprintGenetics

A global view of human centromere variation and evolution

Shenghan Gao, Keisuke K. Oshima, Shu-Cheng Chuang, Mark G. Loftus, Tamara Potapova, Annalaura Montanari, David Gordon, Zikun Yang, Hufsah Ashraf, Peter A. Audano, Marcelo Ayllon, Andrey G Azov, Parithi Balachandran, Anna Okula Basile, Christine R. Beck, , Pi-Chuan Chang

The paper assembles and characterizes 2,110 human centromeres, revealing novel haplotypes, mobile element insertions, and mutation rate variation across chromosomes.

Nature · Jul 29, 2026Peer-reviewedGenomics

Impact and characterization of serial structural variations across humans and great apes

Wolfram Höps, Tobias Rausch, Michael Jendrusch, Hufsah Ashraf, Peter A. Audano, Ola Austine, Anna O. Basile, Christine R. Beck, Marc Jan Bonder, Marta Byrska-Bishop, Mark Chaisson, Zechen Chong, André Corvelo, Scott E. Devine, Peter Ebert, , Fritz J. Sedlazeck

The paper introduces NAHRwhals, a method to detect serial structural variations in long-read genomes, identifies 37 sSV loci in humans, and shows their relevance to disease.

Nature Communications · Sep 12, 2024Peer-reviewedBioinformatics