Author

D. Jacob Machado

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:phylogenetics / evolution· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. de Bernardi Schneider· 1 shared D. A. Janies· 1 shared S. Castroviejo-Fisher· 1 shared T. Grant· 1 shared

Activity by Year

2019-2019 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 2 mutual co-author links

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1 shared paperEvolutionary Biology

A. de Bernardi Schneider

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2 papers

Recent·Most cited

Evolutionary BiologybioRxivSep 5, 2019

Evidence of Absence Treated as Absence of Evidence: The Effects of Variation in the Number and Distribution of Gaps Treated as Missing Data on the Results of Standard Maximum Likelihood Analysis

D. Jacob Machado, S. Castroviejo-Fisher, T. Grant

The paper evaluates how variation in gap numbers and distributions affects maximum likelihood analysis results, finding negative correlations between ML scores and gap opening costs and missing data.

DOI 10.1016/j.ympev.2020.106966

statistical modelbenchmarking

𝕏 PostBluesky

Evolutionary BiologybioRxivJun 18, 2019

Enhanced genome annotation strategy provides novel insights on the phylogeny of Flaviviridae

A. de Bernardi Schneider, D. Jacob Machado, D. A. Janies

The paper develops a genome annotation pipeline for Flaviviridae, improving phylogenetic analysis and reclassifying divergent viruses.

DOI 10.3390/v12080892

whole-genome sequencingdeep learning

𝕏 PostBluesky