Author

D. Ruchnewitz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:virus· 3 Assay:whole-genome sequencing· 3 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:variant calling· 1

Frequent Co-Authors

M. Lässig· 2 shared M. Luksza· 2 shared M. Meijers· 2 shared A. Kreitman· 1 shared A. Roder· 1 shared B. Wang· 1 shared C. Mederos· 1 shared D. Gresham· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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2 shared papersBiophysics

M. Lässig

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Concepts and methods for predicting viral evolution

M. Meijers, D. Ruchnewitz, J. Eberhardt, M. Karmakar, M. Łuksza, M. Lässig

This paper develops methods to predict viral evolution using integrated data on sequences, epidemiology, antigenicity, and phenotypes, providing vaccine strain selection insights.

bioRxiv · Mar 19, 2024 · PreprintBiophysics

Vaccination shapes evolutionary trajectories of SARS-CoV-2

M. Meijers, D. Ruchnewitz, M. Luksza, M. Lässig

This study shows vaccination influences SARS-CoV-2 antigenic evolution by analyzing sequence data, epidemiology, and neutralization assays to model evolutionary dynamics.

bioRxiv · Jul 19, 2022 · PreprintBiophysics

Optimized Quantification of Intrahost Viral Diversity in SARS-CoV-2 and Influenza Virus Sequence Data

A. Roder, K. E. Johnson, M. Knoll, M. Khalfan, B. Wang, S. Schultz-Cherry, S. Banakis, A. Kreitman, C. Mederos, J.-H. Youn, R. Mercado, W. Wang, D. Ruchnewitz, M. I. Samanovic, M. J. Mulligan, , E. Ghedin

This study evaluates variant calling tools for detecting minority variants in viral sequencing data and provides guidance for accurate quantification of intrahost viral diversity.

bioRxiv · May 5, 2021 · PreprintMicrobiology