Comparative phylogenomic analyses of SNP versus full locus datasets: insights and recommendations for researchers
J. S. Suissa, G. Y. De La Cerda, L. C. Graber, C. Jelley, D. Wickell, H. R. Phillips, A. D. Grinage, C. S. Moreau, C. D. Specht, J. J. Doyle, J. B. Landis
This study compares SNP and full locus datasets in phylogenomic analyses, finding that tree topology is largely congruent but filtering missing data too strictly can reduce confidence in relationships.
bioRxiv · Sep 2, 2023 · PreprintEvolutionary Biology