Author

F.-W. Li

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 6 Evolutionary Biology· 2 Microbiology· 1 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 7 Research Focus:cell type annotation· 6 Approach:statistical model· 6 Approach:experimental assay· 5 Assay:bulk RNA-seq· 4 Research Focus:development & morphogenesis· 3 Research Focus:gene regulatory network inference· 3 Research Focus:chromatin & epigenetic regulation· 2

Frequent Co-Authors

S. de Vries· 3 shared A. Dadras· 2 shared A. Gunadi· 2 shared D. A. Hauser· 2 shared I. Irisarri· 2 shared J. de Vries· 2 shared J. Keller· 2 shared J. M. Nelson· 2 shared

Activity by Year

2019-2023 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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3 shared papersPlant Biology

S. de Vries

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Author profile →

10 papers

Recent·Most cited

Biolistics-mediated transformation of hornworts and its application to study pyrenoid protein localization

D. Lafferty, T. A. Robison, A. Gunadi, L. H. Gunn, J. Van Eck, F.-W. Li

This paper develops a biolistics method for transforming hornworts, enabling transient expression and stable transgenic lines, and uses it to study pyrenoid protein localization.

bioRxiv · Oct 23, 2023Plant Biology

Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution

X. Feng, J. Zheng, I. Irisarri, H. Yu, B. Zheng, Z. Ali, S. de Vries, J. Keller, J. M. Fuerst-Jansen, A. Dadras, J. M. Zegers, T. P. Rieseberg, A. Dhabalia Ashok, T. Darienko, M. J. Bierenbroodspot, , A. Mosquna

The paper sequenced four Zygnematophyceae algal genomes to study signaling network evolution, finding expanded genes for multicellularity and environmental response.

bioRxiv · Jan 31, 2023Evolutionary Biology

Nostoc talks back: Temporal patterns of differential gene expression during establishment of the Anthoceros-Nostoc symbiosis

P. Chatterjee, P. Schafran, F.-W. Li, J. C. Meeks

This study uses RNA-Seq to analyze gene expression changes in Anthoceros punctatus during symbiosis with Nostoc punctiforme, revealing temporal patterns of nitrogen fixation and plant responses to nitrogen starvation.

bioRxiv · Oct 27, 2021Microbiology

Revisiting the early evolution of Cyanobacteria with a new thylakoid-less and deeply diverged isolate from a hornwort

N. Rahmatpour, D. A. Hauser, J. M. Nelson, P. Y. Chen, J. C. Villarreal, M.-Y. Ho, F.-W. Li

The paper describes a new Gloeobacteria isolate, Anthocerobacter panamensis, which provides insights into early Cyanobacteria evolution by revealing unique traits and a reduced photosystem gene set.

Current Biology · Jul 1, 2021Peer-reviewedEvolutionary Biology

Underwater CAM photosynthesis elucidated by Isoetes genome

D. Wickell, L.-Y. Kuo, H.-P. Yang, A. D. Ashok, I. Irisarri, A. Dadras, S. de Vries, J. de Vries, Y.-M. Huang, Z. Li, M. S. Barker, N. T. Hartwick, T. P. Michael, F.-W. Li

This study investigates underwater CAM in Isoetes taiwanensis using genome and RNA-seq data, identifying key differences in carboxylation and circadian control compared to terrestrial CAM.

bioRxiv · Jun 9, 2021Plant Biology

An ancient route towards salicylic acid and its implications for the perpetual Trichormus-Azolla symbiosis

S. de Vries, C. Herrfurth, F.-W. Li, I. Feussner, J. de Vries

The paper identifies salicylic acid (SA) in Azolla filiculoides and shows its role in a feedback loop with cyanobacteria, supporting the perpetual nature of their symbiosis.

bioRxiv · Mar 12, 2021Plant Biology

A simple Agrobacterium-mediated stable transformation technique for the hornwort model Anthoceros agrestis

E. Frangedakis, M. Waller, T. Nishiyama, H. Tsukaya, X. Xu, Y. Yue, M. Tjahjadi, A. Gunadi, J. Van Eck, F.-W. Li, P. Szovenyi, K. Sakakibara

This paper develops a stable transformation technique for the hornwort Anthoceros agrestis using Agrobacterium, enabling genetic studies of molecular mechanisms in land plants.

bioRxiv · Jan 7, 2021 · PreprintPlant Biology

Study on H3K9 acetylation modification and TLR9 immune regulation mechanism in patients with anti-HBV treatment using thymosin a1 combined with entecavir

H.-P. v, K. Wang, W. Du, H.-H. Cao, Q.-Y. Zhong, S.-C. Yin, J.-B. Zhong, F.-W. Li

This study investigates how H3K9 acetylation modification affects TLR9 expression and immune response in patients treated with thymosin a1 and entecavir for hepatitis B.

bioRxiv · Oct 31, 2020 · PreprintPharmacology & Toxicology

Symbiotic cyanobacteria communities in hornworts across time, space, and host species

J. M. Nelson, D. A. Hauser, F.-W. Li

The paper investigates cyanobacteria communities in hornworts across time, space, and host species, finding high phylogenetic diversity and varying preferences among sympatric species.

bioRxiv · Jun 18, 2020Plant Biology

An ancestral signalling pathway is conserved in plant lineages forming intracellular symbioses

G. V. Radhakrishnan, J. Keller, M. K. Rich, T. Vernie, D. L. Mbadinga Mbadinga, N. Vigneron, L. Cottret, H. San Clemente, C. Libourel, J. Cheemah, A.-M. Linde, D. M. Eklund, S. Cheng, G. K.-S. Wong, U. Lagercrantz, , P.-M. Delaux

The paper shows that an ancestral signaling pathway is conserved in plant lineages with intracellular symbioses but lost in those with extracellular symbioses.

bioRxiv · Oct 16, 2019Plant Biology