Author

Dam Bae

University of Iowa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 2 Genomics· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Organism:rat· 4 Approach:statistical model· 4 Assay:proteomics· 3 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Assay:ATAC-seq· 1

Frequent Co-Authors

Archana Natarajan RajaiD· 4 shared David A. GauliD· 4 shared David Jimenez‐MoralesiD· 4 shared Facundo M. FernándeziD· 4 shared Gary CutteriD· 4 shared Hasmik KeshishianiD· 4 shared James A. SanfordiD· 4 shared Joshua AdkinsiD· 4 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersMolecular Biology

Archana Natarajan RajaORCID

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Author profile →

4 papers

Recent·Most cited

Multi-omic identification of key transcriptional regulatory programs during endurance exercise training in rats

Gregory R. Smith, Bingqing Zhao, Maléne E. Lindholm, Archana Natarajan Raja, Mark R. Viggars, Hanna Pinças, Nicole R. Gay, Yifei Sun, Sindhu Vangeti, Yongchao Ge, Venugopalan D. Nair, James A. Sanford, Mary Anne S. Amper, Mital Vasoya, Kevin S. Smith, , Ian R. Lanza

The paper identifies tissue-specific transcriptional regulatory programs in rats undergoing endurance exercise training by integrating chromatin accessibility, DNA methylation, and gene expression data.

Nature Communications · Mar 21, 2026Peer-reviewedGenomics

Sexually distinct multi omic responses to progressive endurance exercise training in the rat lung. Findings from MoTrPAC

Gina M. Many, Tyler J. Sagendorf, Hugh D. Mitchell, James A. Sanford, Samuel M. Cohen, Ravi S. Misra, Igor L. Estevao, Ivo Díaz Ludovico, David A. Gaul, Maléne E. Lindholm, Mereena George Ushakumary, James C. Pino, Nicholas Musi, Jia Nie, Facundo M. Fernández, , Michael P. Snyder

This study identifies sex-specific multi-omic responses to endurance exercise training in rat lungs, revealing differences in immune pathways and mitochondrial acetylation between males and females.

American Journal of Respiratory Cell and Molecular Biology · Oct 24, 2025Peer-reviewedPhysiology

Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue

Gina M. Many, James A. Sanford, Tyler J. Sagendorf, Zhenxin Hou, Pasquale Nigro, Katie L. Whytock, David Amar, Tiziana Caputo, Nicole R. Gay, David A. Gaul, Michael F. Hirshman, David Jimenez‐Morales, Maléne E. Lindholm, Michael J. Muehlbauer, Maria T. Vamvini, , Russell P. Tracy

This study examines how endurance exercise training affects rat subcutaneous white adipose tissue, revealing sex-specific molecular responses and differences in adiposity and metabolism.

Nature Metabolism · May 1, 2024Peer-reviewedMolecular Biology

Temporal dynamics of the multi-omic response to endurance exercise training across tissues

MoTrPAC Study Group, David Amar, Nicole R. Gay, Pierre M. Jean Beltran, Joshua Adkins, José Juan Almagro Armenteros, Euan Angus Ashley, Julián Ávila-Pacheco, Dam Bae, Nasim Bararpour, Charles Burant, Clary B. Clish, Gary Cutter, Surendra Dasari, Courtney Dennis, , Bailey E. Jackson

This study profiles multi-omic changes in multiple tissues of rats during endurance exercise training, identifying molecular adaptations and sex-specific responses across time.

bioRxiv · Sep 21, 2022 · PreprintMolecular Biology