Author
Indiana University Bloomington
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
3 papers
Recent·Most cited
Kaiyuan Zhu, Alejandro A. Schäffer, Welles Robinson…·S. Cenk Şahinalp
CAMMiQ improves microbial strain-level detection and quantification in single-cell metagenomics by using combinatorial optimization and doubly-unique substrings, outperforming existing methods in accuracy.
Farid Rashidi Mehrabadi, Kerrie L. Marie, Eva Pérez‐Guijarro…·S. Cenk Şahinalp
Trisicell infers subclonal expansion patterns and therapeutic impact of intratumor heterogeneity from scRNAseq data, revealing correlations between mutational composition and tumor aggressiveness.
Erfan Sadeqi Azer, Farid Rashidi Mehrabadi, Salem Malikić…·S. Cenk Şahinalp
PhISCS-BnB computes the most likely perfect tumor phylogeny from single-cell sequencing data, offering optimality guarantees and significant speed improvements over existing methods.