Author

H. Olsen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:long-read sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Organism:E. coli· 1

Frequent Co-Authors

M. Jain· 2 shared A. Preston· 1 shared J. Abrahams· 1 shared J. G. DuBose· 1 shared M. Akeson· 1 shared M. Hoogshagen· 1 shared M. S. Robeson· 1 shared N. Ring· 1 shared

Activity by Year

2018-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersBioengineering

M. Jain

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3 papers

Recent·Most cited

The complexities of inferring symbiont function: Paraburkholderia symbiont dynamics in social amoeba populations and its impact on the amoeba microbiome

J. G. DuBose, M. S. Robeson, M. Hoogshagen, H. Olsen, T. S. Haselkorn

The paper investigates Paraburkholderia symbiont dynamics in D. discoideum populations, finding that only P. agricolaris persists and that the symbiont may dominate the microbiota rather than diversify it.

bioRxiv · Aug 21, 2021Evolutionary Biology

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

N. Thomas, V. Poodari, M. Jain, H. Olsen, M. Akeson, R. Abu-Shumays

This paper describes a method for direct tRNA sequencing using Oxford Nanopore MinION, achieving 76-92% full-length reads and detecting all 42 tRNA isoacceptors in E. coli.

bioRxiv · Apr 26, 2021Bioengineering

Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing

N. Ring, J. Abrahams, M. Jain, H. Olsen, A. Preston, S. Bagby

This paper demonstrates the use of barcoded nanopore sequencing and optimized assembly pipelines to resolve complex Bordetella pertussis genomes, revealing inter-strain genomic rearrangements and challenges with highly duplicated regions.

bioRxiv · Aug 3, 2018Microbiology