Author

Hamidreza Chitsaz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Afsoon AfzaliD· 1 shared Ali Sharifi‐ZarchiiD· 1 shared Farzane Rasti· 1 shared Govindarajan Kunde‐RamamoorthyiD· 1 shared Harish Nagarajan· 1 shared Hassan Nikaein· 1 shared Karsten Zengler· 1 shared Mallory Embree· 1 shared

Activity by Year

2014-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Afsoon AfzalORCID

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2 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedJul 21, 2025

ARYANA-BS: Context-Aware Alignment of Bisulfite-Sequencing Reads

Hassan Nikaein, Ali Sharifi‐Zarchi, Afsoon Afzal…·Govindarajan Kunde‐Ramamoorthy

ARYANA-BS improves bisulfite sequencing read alignment by considering DNA methylation patterns, achieving high accuracy and efficiency.

DOI 10.1186/s12859-025-06182-5

DNA methylationstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivFeb 24, 2014

Efficient synergistic single-cell genome assembly

Narjes S. Movahedi, Zeinab Taghavi, Mallory Embree…·Hamidreza Chitsaz

This paper introduces HyDA, a co-assembly algorithm that improves single-cell genome assembly quality by combining multiple datasets, resulting in longer contigs and more complete genomes.

DOI 10.3389/fbioe.2016.00042

whole-genome sequencingdeep learning

𝕏 PostBluesky