Author

Hanjun Cheng

Institute for Systems Biology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

James R. HeathiD· 2 shared Wei WeiiD· 2 shared Alphonsus H. C. NgiD· 1 shared Antoni RibasiD· 1 shared C. LiuiD· 1 shared Cameron T. FloweriD· 1 shared Charles WardeniD· 1 shared Chunmei Liu· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersCancer Biology

James R. HeathORCID

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2 papers

Recent·Most cited

Cancer BiologyNature CommunicationsPeer-reviewedApr 15, 2026

Sequential transcriptional waves and NF-κB-driven chromatin remodeling direct drug-induced dedifferentiation in cancer

Yapeng Su, Chunmei Liu, Xiang Lu…·Wei Wei

This study identifies NF-κB-driven chromatin remodeling as a mechanism for drug-induced dedifferentiation in cancer, revealing its role in promoting drug-tolerant persister states.

14 citations

humanbulk RNA-seq

𝕏 PostBluesky

Systems BiologyCell SystemsPeer-reviewedApr 1, 2025

Signaling and transcriptional dynamics underlying early adaptation to oncogenic BRAF inhibition

Cameron T. Flower, C. Liu, Hui-Yu Chuang…·Forest M. White

The paper investigates early signaling and transcriptional changes in melanoma cells under BRAF inhibitor treatment, identifying SFK activation as a compensatory mechanism and demonstrating its sensitivity to co-inhibition.

8 citations

humanproteomics

𝕏 PostBluesky