Author

Harri Lähdesmäki

Aalto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Assay:proteomics· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Emmi JokineniD· 2 shared Jani HuuhtaneniD· 2 shared Alexandru DumitrescuiD· 1 shared Dani KorpelaiD· 1 shared Markus HeinoneniD· 1 shared Satu M. MustjokiiD· 1 shared Satu Mustjoki· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 15 mutual co-author links

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2 shared papersImmunology

Emmi JokinenORCID

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2 papers

Recent·Most cited

ImmunologybioRxivJun 26, 2023

EPIC-TRACE: predicting TCR binding to unseen epitopes using attention and contextualized embeddings

Dani Korpela, Emmi Jokinen, Alexandru Dumitrescu…·Harri Lähdesmäki

EPIC-TRACE predicts TCR binding to unseen epitopes using attention mechanisms and contextualized embeddings, outperforming existing models.

DOI 10.1093/bioinformatics/btad743

proteomicsdeep learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 21, 2019

Determining epitope specificity of T cell receptors with TCRGP

Emmi Jokinen, Jani Huuhtanen, Satu M. Mustjoki…·Harri Lähdesmäki

The paper introduces TCRGP, a Gaussian process method for predicting TCR epitope specificity, and applies it to scRNA+TCRβ data to identify HBV-epitope specific T cells in hepatocellular carcinoma patients.

34 citations

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