Author

I. Julca

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Plant Biology· 3

Signature Assays, Organisms & Methods

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Organism:plant (other)· 6 Assay:bulk RNA-seq· 4 Research Focus:gene regulatory network inference· 4 Assay:whole-genome sequencing· 4 Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Approach:statistical model· 3 Research Focus:differential expression· 2

Frequent Co-Authors

M. Marcet-Houben· 3 shared M. Mutwil· 3 shared T. Gabaldon· 3 shared P. Vargas· 2 shared A. Kam· 1 shared A. Marques· 1 shared A. R. Fernie· 1 shared A.-C. Lindner· 1 shared

Activity by Year

2017-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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3 shared papersEvolutionary Biology

M. Marcet-Houben

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6 papers

Recent·Most cited

Plant Expression Omnibus - a comparative transcriptomic database for 103 Archaeplastida

E. Koh, W. Goh, E. Villanueva, I. Julca, M. Mutwil

The Plant Expression Omnibus provides a comparative transcriptomic database with over 60,000 RNA-seq samples and four million genes to explore gene expression across 103 Archaeplastida species.

The Plant Journal · Mar 1, 2024Peer-reviewedPlant Biology

Genomic, transcriptomic, and metabolomic analysis of Traditional Chinese Medicine plant Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites

I. Julca, D. Mutwil-Anderwald, V. Manoj, Z. Khan, S. K. Lai, L. K. Yang, I. T. Beh, J. Dziekan, Y. P. Lim, S. K. Lim, Y. W. Low, Y. I. Lam, Y. Mu, Q. W. Tan, P. Nuc, , M. Mutwil

This study identifies ursolic acid as the main anti-cancer compound in Oldenlandia corymbosa and reveals its mode of action through genomic, transcriptomic, and metabolomic analysis.

bioRxiv · Jun 14, 2022 · PreprintPlant Biology

Comparative transcriptomic analysis reveals conserved transcriptional programs underpinning organogenesis and reproduction in land plants

I. Julca, M. Flores, S. Proost, A.-C. Lindner, D. Hackenberg, L. Steinbachova, C. Michaelidis, S. Gomes Pereira, C. S. Misra, T. Kawashima, M. Borg, F. Berger, J. Goldberg, M. Johnson, D. Honys, , M. Mutwil

This study generates gene expression atlases for 10 plant species to identify conserved transcriptional programs in organogenesis and reproduction, revealing gene co-option as a key mechanism for organ evolution.

bioRxiv · Oct 29, 2020Evolutionary Biology

Genomic evidence for recurrent genetic admixture during domestication mediterranean olive trees (Olea europaea).

I. Julca, M. Marcet-Houben, F. Cruz, J. Gomez-Garrido, B. S. Gaut, C. M. Diez, I. G. Gut, T. S. Alioto, P. Vargas, T. Gabaldon

This study analyzes genomic data from olive trees to show genetic admixture during domestication and identifies selected genes related to stress response and development.

bioRxiv · Mar 28, 2020Evolutionary Biology

A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe

J. M. Farrant, H. Hilhorst, J. Buitink, W. Ligterink, O. Leprince, S. Pelletier, T. Gabaldon, M. E. Schranz, J. Delahaie, I. Julca, M. Marcet-Houben, H. Nijveen, M. Derks, E. Schijlen, T. Zhao, , A. Marques

This study sequenced the genome of Castanospermum australe, a desiccation-sensitive legume, and found that its seeds remain metabolically active and lack mechanisms for desiccation tolerance.

bioRxiv · Jun 10, 2019 · PreprintPlant Biology

Phylogenomics of the olive tree (Olea europaea) disentangles ancient allo- and autopolyploidizations in Lamiales.

I. Julca, M. Marcet-Houben, P. Vargas, T. Gabaldon

The paper uses phylogenomics to identify and distinguish between ancient allo- and autopolyploidization events in the olive tree lineage.

bioRxiv · Jul 13, 2017Evolutionary Biology