Author

J. Bobe

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 6 Physiology· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Research Focus:cell type annotation· 5 Assay:bulk RNA-seq· 4 Organism:zebrafish· 3 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2

Frequent Co-Authors

Y. Guiguen· 5 shared C. Klopp· 3 shared E. Jouanno· 3 shared J. Montfort· 3 shared J. Pasquier· 3 shared C. Berthelot· 2 shared C. Cabau· 2 shared C. Roques· 2 shared

Activity by Year

2017-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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5 shared papersEvolutionary Biology

Y. Guiguen

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Author profile →

9 papers

Recent·Most cited

Evolutionarily conserved ovarian fluid proteins are responsible for extending egg viability in salmonid fish

A. Gueho, D. Zarski, H. Rime, B. Guevel, E. Com, R. Lavigne, T. Nguyen, J. Montfort, C. Pineau, J. Bobe

The paper identifies salmonid-specific proteins in ovarian fluid that enhance egg viability by analyzing proteomic differences and testing biological activity.

bioRxiv · Sep 5, 2023Evolutionary Biology

Circulating MicroRNAs indicative of sex and stress in the European seabass (Dicentrarchus labrax): toward the identification of new biomarkers.

C. Houdelet, E. Blondeau-Bidet, M. Estevez-Villar, X. Mialhe, S. Hermet, F. Ruelle, G. Dutto, A. Bajek, J. Bobe, B. Geffroy

This study identifies sex- and stress-related miRNAs in European seabass using small RNA-sequencing and RT-qPCR, with potential for biomarker applications in fish.

bioRxiv · Jul 3, 2023Physiology

Yeast extract improves growth in rainbow trout (Oncorhynchus mykiss) fed a fishmeal-free diet and modulates the hepatic and distal intestine transcriptomic profile

L. Frohn, D. Peixoto, C. Guyomar, C. Teixeira, F. Terrier, P. Aguirre, S. Maman Haddad, J. Bobe, B. Costas, N. Richard, K. Pinel, S. Skiba-Cassy

This study evaluates the effects of adding yeast extract to a fishmeal-free diet on rainbow trout growth and transcriptomic profiles, finding improved growth and modulated gene expression.

bioRxiv · Feb 23, 2023Physiology

Genome structures resolve the early diversification of teleost fishes

E. Parey, A. Louis, J. Montfort, O. Bouchez, C. Roques, C. Iampietro, J. Lluch, A. Castinel, C. Donnadieu, T. Desvignes, C. F. Bucao, E. Jouanno, M. Wen, S. Mejri, R. P. Dirks, , Y. Guiguen

The paper uses genome assemblies to resolve the evolutionary relationships among early diverging teleost lineages, placing Elopomorpha and Osteoglossomorpha as sister groups.

bioRxiv · Apr 7, 2022Evolutionary Biology

Effect of a low concentration in chloride, sodium and potassium on oocyte maturation, oocyte hydration, ovulation and egg quality in rainbow trout.

E. Segret, E. Cardona, S. Skiba-Cassy, F. Cachelou, J. Bobe

This study investigates how low water salinity affects oocyte maturation, ovulation, and egg quality in rainbow trout, finding negative impacts on these processes.

bioRxiv · Jun 22, 2021Physiology

Evolution of sex hormone binding globulins reveals early gene duplication at the root of vertebrates

Y. Guiguen, J. Pasquier, A. Fostier, J. Bobe

The paper identifies Shbgb as a novel sex hormone-binding globulin gene with gonadal expression, showing that Shbg genes originated from a whole genome duplication at the vertebrate root, followed by losses and tissue specialization.

bioRxiv · Jul 2, 2020Evolutionary Biology

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Q. Pan, R. Feron, A. Yano, R. Guyomard, E. Jouanno, E. Vigouroux, M. Wen, J.-M. Busnel, J. Bobe, J.-P. Concordet, H. Parrinello, L. Journot, C. Klopp, J. Lluch, C. Roques, , Y. Guiguen

The paper identifies and functionally validates an ancient duplicated anti-Mullerian hormone gene as the master sex determining gene in Northern pike, revealing limited sex chromosome differentiation.

bioRxiv · Feb 13, 2019Evolutionary Biology

Double Maternal Effect: Duplicated Nucleoplasmin 2 Genes, npm2a And npm2b, Are Shared By Fish And Tetrapods, And Have Distinct And Essential Roles In Early Embryogenesis

C. T. Cheung, J. Pasquier, A. Bouleau, T.-V. Nguyen, F. Chesnel, Y. Guiguen, J. Bobe

This paper identifies two duplicated npm2 genes, npm2a and npm2b, in vertebrates, showing their evolutionary origins and distinct essential roles in early embryogenesis.

bioRxiv · Jun 19, 2017Evolutionary Biology

Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome

J. Pasquier, I. Braasch, P. Batzel, C. Cabau, J. Montfort, T. Nguyen, E. Jouanno, C. Berthelot, C. Klopp, L. Journot, J. Postlethwait, Y. Guiguen, J. Bobe

The paper analyzes gene expression evolution after whole-genome duplication in teleost fish using the spotted gar genome and PhyloFish data, showing rapid fate determination of duplicates and ongoing functional divergence.

bioRxiv · Jun 19, 2017Evolutionary Biology