Author

J. Cirrone

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 2

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 2 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

A. P. Mähönen· 1 shared A.V. Pasquino· 1 shared B. Blob· 1 shared B. De Rybel· 1 shared B. Gottgens· 1 shared B. Scheres· 1 shared C. Shanks· 1 shared C. W. Melnyk· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPlant Biology

A. P. Mähönen

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2 papers

Recent·Most cited

Analysis of phloem trajectory links tissue maturation to cell specialization.

P. Roszak, J.-o. Heo, B. Blob, K. Toyokura, M. A. de Luis Balaguer, W. Lau, F. K. Hamey, J. Cirrone, X. Wang, R. Ursache, H. Tavares, K. Verstaen, J. Wendrich, C. W. Melnyk, D. Shasha, , Y. Helariutta

The paper reconstructs the protophloem developmental trajectory in Arabidopsis root cells to show how maturation gradients and transcription factors regulate cell specialization.

bioRxiv · Jan 18, 2021 · PreprintPlant Biology

ConnecTF: A platform to build gene networks by integrating transcription factor-target gene interactions

M.D. Brooks, C.-L. Juang, M.S. Katari, J.M. Alvarez, A.V. Pasquino, H.-J. Shih, J. Huang, C. Shanks, J. Cirrone, G.M. Coruzzi

ConnecTF integrates TF-target gene interactions to build and refine gene regulatory networks in plants, demonstrating its utility through three case studies.

bioRxiv · Jul 7, 2020Plant Biology