Author

J. Copperman

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:cryo-EM· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1

Frequent Co-Authors

D. M. Zuckerman· 3 shared A. E. Davies· 1 shared A. Petersen· 1 shared B. G. Haddad· 1 shared B. Mostofian· 1 shared C. C. Yoshioka· 1 shared I. C. McLean· 1 shared J. A. Flores· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersBiophysics

D. M. Zuckerman

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3 papers

Recent·Most cited

Single-cell morphodynamical trajectories enable prediction of gene expression accompanying cell state change

J. Copperman, I. C. McLean, S. M. Gross, J. Singh, V. Murthy, Y. H. Chang, A. E. Davies, D. M. Zuckerman, L. M. Heiser

The paper develops MMIST, a computational approach linking live-cell morphodynamics to gene expression changes during cell state transitions.

bioRxiv · Jan 18, 2024Cell Biology

Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 A

J. A. Flores, B. G. Haddad, K. A. Dolan, J. B. Myers, C. C. Yoshioka, J. Copperman, D. M. Zuckerman, S. L. Reichow

This study uses CryoEM to resolve the structure of connexin-46/50 gap junction channels in a lipid environment, revealing how lipid interactions stabilize the channel and influence its function.

bioRxiv · Apr 14, 2020Biophysics

Computational estimation of ms-sec atomistic folding times

U. Adhikari, B. Mostofian, J. Copperman, A. Petersen, D. M. Zuckerman

The paper estimates atomistic protein folding times using weighted ensemble simulations on GPUs, showing reduced computational cost compared to conventional MD simulations.

bioRxiv · Mar 15, 2019Biophysics