Author

J. Patrakka

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Pathology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Wernerson· 1 shared A. Witasp· 1 shared B. Schermer· 1 shared D. Unnersjoe-Jess· 1 shared G. Nowak· 1 shared G. Sergei· 1 shared H. Blom· 1 shared H. Olauson· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPathology

A. Wernerson

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2 papers

Recent·Most cited

PathologybioRxivPreprintJan 17, 2024

Comparative analysis of kidney transplantation modeled using precision-cut kidney slices and kidney transplantation in pigs

M. B. Moor, J. Nordström, M. Burmakin…·H. Olauson

This study compares precision-cut kidney slices (PCKS) with pig kidney transplantation to model ischemia-reperfusion injury, finding that PCKS recapitulates post-reperfusion gene expression patterns seen in human kidney transplantation.

DOI 10.1101/2024.01.17.575664

plant (other)bulk RNA-seq

𝕏 PostBluesky

PathologybioRxivPreprintJun 14, 2021

Deep learning-based segmentation and quantification of podocyte foot process morphology

L. Butt, D. Unnersjoe-Jess, M. Hoehne…·T. Benzing

This paper develops a deep learning method to segment and quantify podocyte foot process morphology in kidney tissue, confirming morphological changes in disease states.

DOI 10.1101/2021.06.14.448284

mousehuman

𝕏 PostBluesky