J. Penders

The paper introduces MNDA, a framework for analyzing microbiome dynamics using individual-specific networks, showing improved prediction and subpopulation detection compared to traditional methods.

This study finds that faecal water from Crohn's disease patients shows higher mucin degradation in vitro but does not cause increased paracellular permeability.

The paper analyzes the gut microbiota and environmental interactions in a Vietnamese household cohort, finding reduced diversity in antibiotic users and potential antimicrobial resistance gene exchange between humans and animals.

This study identifies extraintestinal pathogenic E. coli (ExPEC) as more likely to persist in travelers' intestines for over 12 months compared to other E. coli lineages.

This study finds higher Bacteroides fragilis prevalence in Crohn's disease exacerbations and shows that bft-positive strains increase intestinal epithelial resistance.

The paper analyzes the global spread of the mcr-1 gene in E. coli and associated plasmids, finding high bacterial diversity but limited plasmid types responsible for gene transfer.