Author

Jens Decker

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Approach:experimental assay· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Oliver Raether· 2 shared Agathe NiewiendaiD· 1 shared Alexey I. NesvizhskiiiD· 1 shared Andreas HildebrandtiD· 1 shared Andreas‐David BrunneriD· 1 shared Daniela Ludwig· 1 shared David TeschneriD· 1 shared Fengchao YuiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Oliver Raether

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

midiaPASEF maximizes information content in data-independent acquisition proteomics

Ute Distler, Mateusz Krzysztof Łącki, Michał Piotr Startek, David Teschner, Sven Brehmer, Jens Decker, Thilo Schild, Jonathan R. Krieger, Florian Krohs, Oliver Raether, Andreas Hildebrandt, Stefan Tenzer

The paper introduces midiaPASEF, a DIA scan mode that enhances information content in proteomics, enabling precise precursor m/z determination and efficient automated processing.

bioRxiv · Jan 30, 2023 · PreprintBioinformatics

High sensitivity dia-PASEF proteomics with DIA-NN and FragPipe

Vadim Demichev, Łukasz Szyrwiel, Fengchao Yu, Guo Ci Teo, George Rosenberger, Agathe Niewienda, Daniela Ludwig, Jens Decker, Stephanie Kaspar‐Schoenefeld, Kathryn Susan Lilley, Michael Mülleder, Alexey I. Nesvizhskii, Markus Ralser

The paper demonstrates improved proteomic depth using DIA-NN and FragPipe for dia-PASEF data, achieving higher sensitivity and quantification in complex samples.

Nature Communications · Jul 8, 2022Peer-reviewedBioinformatics

Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer

Florian Meier, Andreas‐David Brunner, Scarlet Koch, Heiner Koch, Markus Lubeck, Michael Krause, Niels Goedecke, Jens Decker, Thomas Kosinski, Melvin A. Park, Nicolai Bache, Ole B. Hørning, Jürgen Cox, Oliver Raether, Matthias Mann

The paper introduces the timsTOF Pro instrument with online PASEF, achieving high sensitivity and reproducibility in proteomics.

Molecular & Cellular Proteomics · Nov 5, 2018Peer-reviewedSystems Biology