Author

Jingyun Liu

Duke University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Beile GaoiD· 1 shared Binbin CuiiD· 1 shared Bing WangiD· 1 shared Guangliang Wu· 1 shared Hongguang Han· 1 shared Lian‐Hui ZhangiD· 1 shared Liang YangiD· 1 shared Liangxiong Xu· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperMicrobiology

Beile GaoORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 11, 2026

Lense: Optimizing data preprocessing in single-cell omics using LLMs

Jingyun Liu, Zhicheng Ji

Lense optimizes single-cell omics preprocessing by using language models to select the best pipeline based on visual comparisons of low-dimensional representations.

DOI 10.64898/2026.05.07.723465

scRNA-seqmachine learning (classical)

𝕏 PostBluesky

MicrobiologymLifePeer-reviewedDec 1, 2025

The long-chain fatty acid-CoA ligase FadD1 monitors Pseudomonas aeruginosa quorum sensing as a receptor of cis-2-decenoic acid

Shihao Song, Jingyun Liu, Bing Wang…·Yinyue Deng

This paper identifies FadD1 as a receptor for cis-DA quorum sensing in P. aeruginosa, showing it regulates virulence and physiology by binding cis-DA and modulating gene expression.

DOI 10.1002/mlf2.70044

bacteria (other)experimental assay

𝕏 PostBluesky