Author

Josh Hough

University of California, Santa Cruz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Organism:plant (other)· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Bryan P. ThornlowiD· 1 shared Dianne Velasco· 1 shared Henry Z. GongiD· 1 shared J Arvid Agren· 1 shared Jacquelyn M. RogeriD· 1 shared Jeffrey Ross-Ibarra· 1 shared Mallikarjuna Aradhya· 1 shared Russell B Corbett-DetigiD· 1 shared

Activity by Year

2014-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperBioinformatics

Bryan P. ThornlowORCID

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3 papers

Recent·Most cited

BioinformaticsProceedings of the National Academy of SciencesPeer-reviewedAug 20, 2018

Transfer RNA genes experience exceptionally elevated mutation rates

Bryan P. Thornlow, Josh Hough, Jacquelyn M. Roger…·Russell B Corbett-Detig

The paper shows tRNA genes have much higher mutation rates than the genome average, driven by transcription-associated mutagenesis and purifying selection.

56 citations

humanmultiple species

𝕏 PostBluesky

Evolutionary BiologybioRxivSep 27, 2016

Evolutionary genomics of peach and almond domestication

Dianne Velasco, Josh Hough, Mallikarjuna Aradhya, Jeffrey Ross-Ibarra

This study compares the genomic diversity and domestication impacts of almond and peach to understand their evolutionary and domestication histories.

DOI 10.1534/g3.116.032672

plant (other)whole-genome sequencing

𝕏 PostBluesky

Evolutionary BiologybioRxivSep 5, 2014

Chromosomal distribution of cyto-nuclear genes in a dioecious plant with sex chromosomes

Josh Hough, J Arvid Agren, Spencer CH Barrett, Stephen I Wright

This study examines the chromosomal distribution of cyto-nuclear genes in a plant with sex chromosomes and finds no evidence supporting co-adaptation or sexual conflict hypotheses.

DOI 10.1093/gbe/evu197

plant (other)bulk RNA-seq

𝕏 PostBluesky