Author

Judith S. Rodriguez

Pennsylvania State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:matrix factorization· 1 Assay:metagenomics· 1

Frequent Co-Authors

David KoslickiiD· 2 shared Mahmudur Rahman HeraiD· 2 shared Chunyu MaiD· 1 shared Shaopeng LiuiD· 1 shared Wei WeiiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

David KoslickiORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 12, 2025

Leveraging FracMinHash Containment for Genomic dN/dS

Judith S. Rodriguez, Mahmudur Rahman Hera, David Koslicki

This paper introduces FracMinHash dN/dS, an alignment-free method to estimate dN/dS ratios across genomes, showing it is scalable and comparable to traditional methods.

1 citation

bacteria (other)virus

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 6, 2023

Fast, lightweight, and accurate metagenomic functional profiling using FracMinHash sketches

Mahmudur Rahman Hera, Shaopeng Liu, Wei Wei…·David Koslicki

This paper introduces fmh-funprofiler, a fast and lightweight metagenomic functional profiler using FracMinHash sketches, showing improved purity and speed compared to alignment-based methods.

6 citations

metagenomicsstatistical model

𝕏 PostBluesky