GBZ-base and GAF-base: Indexed pangenome file formats
Jouni Sirén, Benedict Paten, Derek Albracht…·Sergey Koren
The paper introduces GBZ-base and GAF-base, indexed pangenome file formats for efficient subgraph and alignment extraction.
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National Institutes of Health
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
3 papers
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Jouni Sirén, Benedict Paten, Derek Albracht…·Sergey Koren
The paper introduces GBZ-base and GAF-base, indexed pangenome file formats for efficient subgraph and alignment extraction.
Pilar Álvarez Jerez, Arang Rhie, Juhyun Kim…·Cornelis Blauwendraat
The paper generates and characterizes a custom genome assembly for the KOLF2.1J iPSC line to improve genomic analysis accuracy compared to standard references.
Ángel Goñi-Moreno, Ilaria Benedetti, Juhyun Kim, Víctor de Lorenzo
The paper deconvolves gene expression noise into physical dynamics of promoters by modeling and experimentally validating the effects of regulator-promoter distance on transcriptional noise in engineered bacteria.