Author

Julie Rosenbaum

Cold Spring Harbor Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Organism:human· 2 Assay:whole-exome sequencing· 2 Research Focus:genome assembly· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Michael RonemusiD· 3 shared Gholson J. LyoniD· 2 shared Giuseppe NarzisiiD· 2 shared Han FangiD· 2 shared Ivan Iossifov· 2 shared Michael C. SchatziD· 2 shared Yiyang Wu· 2 shared Zihua Wang· 2 shared

Activity by Year

2014-2017 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersBioinformatics

Michael RonemusORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintJun 13, 2017

Mutational sequencing for accurate count and long-range assembly

Vijay Kumar, Julie Rosenbaum, Zihua Wang…·Dan Levy

The paper introduces muSeq, a protocol that uses mutational sequencing to improve count accuracy and long-range assembly from short-read data.

DOI 10.1101/149740

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsNature ProtocolsPeer-reviewedNov 17, 2016

Indel variant analysis of short-read sequencing data with Scalpel

Han Fang, Ewa A. Grabowska, Kanika Arora…·Giuseppe Narzisi

This paper introduces Scalpel, an open-source tool for accurate indel detection from short-read sequencing data, and demonstrates its application in various analysis modes.

DOI 10.1038/nprot.2016.150

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivSep 17, 2014

Reducing INDEL calling errors in whole-genome and exome sequencing data

Han Fang, Yiyang Wu, Giuseppe Narzisi…·Gholson J. Lyon

This study identifies sources of INDEL calling errors in sequencing data and shows that whole-genome sequencing (WGS) outperforms whole-exome sequencing (WES) in accuracy and sensitivity for detecting INDELs.

DOI 10.1186/s13073-014-0089-z

humanwhole-genome sequencing

𝕏 PostBluesky