MicrobiologybioRxiv
Benchmarking taxonomic classifiers with Illumina and Nanopore sequence data for clinical metagenomic diagnostic applications
This paper benchmarks taxonomic classifiers for metagenomic sequencing data, finding that Bracken with a standard database achieves the highest species-level classification accuracy across Illumina and Nanopore platforms.
DOI 10.1099/mgen.0.000886