Author

Karynne E. Patterson

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Caitlin N. JacquesiD· 2 shared Christina ZakarianiD· 2 shared Danny E. MilleriD· 2 shared Jonas A. GustafsoniD· 2 shared Joy GoffenaiD· 2 shared Sophie H. R. StorziD· 2 shared Adrienne HellandiD· 1 shared Akshay Kumar AvvaruiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersBioinformatics

Caitlin N. JacquesORCID

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2 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedAug 4, 2026

A comprehensive assessment of tandem repeat genotyping methods for Nanopore long-read genomes

ELBAY E. ALIYEV, Akshay Kumar Avvaru, Wouter De Coster…·Harriet Dashnow

This paper benchmarks 7 TR genotyping tools using Nanopore long-read data, finding that no single tool is best across all metrics, and that sequence-level accuracy is crucial for clinical and population studies.

DOI 10.1186/s13059-026-04210-y

humanwhole-genome sequencing

𝕏 PostBluesky

Genetic & Genomic MedicinemedRxivPreprintJul 10, 2026

Benchmarking long-read variant sensitivity across ONT and PacBio platforms using known clinically reported variants in a cohort of critically ill newborns

Colby T. Marvin, Joseph M. Devaney, Kati J. Buckingham…·Jessica X. Chong

DOI 10.64898/2026.07.07.26357482

humanwhole-genome sequencing

𝕏 PostBluesky