Author

Kimia Ghafari

University of Pittsburgh

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:proteomics· 1 Approach:simulation· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

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Andrew G. DeMarcoiD· 1 shared Bernie DevliniD· 1 shared Kathryn RoederiD· 1 shared Lujing Zhang· 1 shared Matthew L. MacDonaldiD· 1 shared

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2026-2026 · peak 1/yr

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Andrew G. DeMarcoORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintAug 7, 2026

✦ In-depth digest

Inferring disruption of directed graphs using LIKA reveals altered protein phosphorylation networks in schizophrenia

Lujing Zhang, Andrew G. DeMarco, Kimia Ghafari…·Kathryn Roeder

LIKA, a likelihood model over many-to-many kinase-substrate networks, beats KSEA in simulations with shared substrates, recovers EGFR and ABL1 in cell lines, and ranks MAPK3 first in schizophrenia cortex.

DOI 10.64898/2026.08.06.743374

humanproteomics

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