Author

M. Demir

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 2 Bioengineering· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell signaling & trafficking· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. Barros· 1 shared A. Bradley· 1 shared A. Singharoy· 1 shared B. Fu· 1 shared B. Kunz· 1 shared C. K. Chen· 1 shared D. J. Adams· 1 shared D. Pilger· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperCell Biology

A. Barros

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Adaptive Artificial Intelligence to Teach Interactive Molecular Dynamics in the Context of Human-Computer Interaction

M. Demir, C. K. Chen, S. M. Leahy, P. Mishra, A. Singharoy

This paper uses AI to analyze coordination dynamics in human-AI teams during interactive molecular dynamics tasks to foster discovery curiosity.

bioRxiv · Aug 26, 2023 · PreprintBioengineering

Non-alcoholic steatohepatitis disrupts diurnal liver transcriptome rhythms in mice

L. V. de Assis, M. Demir, H. Oster

This study shows that NASH disrupts diurnal liver transcriptome rhythms in mice, with phase and amplitude changes in metabolic and DNA repair pathways, and improves DEG detection by accounting for circadian rhythms.

bioRxiv · Jan 24, 2023 · PreprintPhysiology

ATM orchestrates the DNA-damage response to counter toxic non-homologous end-joining at broken replication forks

G. Balmus, D. Pilger, J. Coates, M. Demir, M. Sczaniecka-Clift, A. Barros, M. Woods, B. Fu, F. Yang, E. Chen, M. Ostermaier, T. Stankovic, H. Ponstingl, M. Herzog, K. Yusa, , S. P. P. Jackson

The paper identifies how ATM counteracts toxic non-homologous end-joining at broken replication forks by showing that loss of NHEJ components or BRCA1-A complex confers resistance to DNA-damaging agents in ATM-deficient cells.

bioRxiv · May 24, 2018Cell Biology

Identification and dynamics of the DHHC16-DHHC6 palmitoylation cascade

L. Abrami, T. Dallavilla, P. Sandoz, M. Demir, B. Kunz, G. Savoglidis, V. Hatzimanikatis, F. G. van der Goot

The paper identifies DHHC16 as an upstream palmitoyltransferase regulating DHHC6, revealing a palmitoylation cascade and showing dynamic interconversion of DHHC6 species.

bioRxiv · May 3, 2017Cell Biology