Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
5 papers
Recent·Most cited
M. Zolfo, A. Silverj, A. Blanco-Miguez, P. Manghi, O. Rota-Stabelli, V. Heidrich, J. Jensen, S. Maharjan, E. Franzosa, C. Menni, A. Visconti, F. Pinto, M. Ciciani, C. Huttenhower, A. Cereseto, , N. Segata
The paper presents a method to discover new human gut viruses using enriched virome samples and reports over 162,000 novel viral sequences.
bioRxiv · Feb 19, 2024 · PreprintMicrobiology
F. Beghini, L. J. McIver, A. Blanco-Miguez, L. Dubois, F. Asnicar, S. Maharjan, A. Mailyan, A. M. Thomas, P. Manghi, M. Valles-Colomer, G. Weingart, Y. Zhang, M. Zolfo, C. Huttenhower, E. A. Franzosa, N. Segata
The paper introduces bioBakery 3, a set of tools for microbial community analysis, improving taxonomic, functional, and strain-level profiling with applications to CRC and IBD datasets.
bioRxiv · Nov 19, 2020Microbiology
F. Pinto, M. Zolfo, F. Beghini, F. Armanini, F. Asnicar, A. Silverj, A. Boscaini, N. Salmaso, N. Segata
The paper evaluates virome enrichment protocols by analyzing microbial community changes during filtration steps in water and sediment samples, finding significant non-viral taxa in the final virome.
bioRxiv · Sep 17, 2020 · PreprintMicrobiology
A. Tett, K. D. Huang, F. Asnicar, H. Fehlner-Peach, E. Pasolli, N. Karcher, F. Armanini, P. Manghi, K. Bonham, M. Zolfo, F. De Filippis, C. Magnabosco, R. Bonneau, J. Lusingu, J. Amuasi, , N. Segata
The study identifies four distinct clades within the Prevotella copri complex, showing reduced prevalence in Westernised populations compared to non-Westernised ones.
bioRxiv · Apr 9, 2019Microbiology
F. Asnicar, S. Manara, M. Zolfo, D. T. Truong, M. Scholz, F. Armanini, P. Ferrretti, V. Gorfer, A. Pedrotti, A. Tett, N. Segata
This study identifies vertically transmitted microbial strains from mothers to infants using strain-level metagenomic profiling and metatranscriptomics.
bioRxiv · Oct 21, 2016Microbiology