BioinformaticsbioRxivPreprint
Query to reference single-cell integration with transfer learning
Mohammad Lotfollahi, Mohsen Naghipourfar, Malte D. Luecken…·Fabian Joachim Theis
This paper introduces scArches, a deep learning method for mapping query datasets onto reference single-cell atlases using transfer learning, effectively reducing batch effects and preserving biological information with fewer parameters.