Mile Sikic

Edlib is a fast, exact sequence alignment library using edit distance, outperforming other tools in speed without sacrificing functionality.

This paper demonstrates that high-quality genome assemblies can be generated from long uncorrected reads using Racon, which is faster than existing methods.

The paper evaluates hybrid and non-hybrid de novo assembly methods for nanopore reads, finding hybrid methods perform better at lower coverage and non-hybrid methods succeed at higher coverage.

GraphMap improves nanopore sequencing read mapping with high sensitivity and precision, outperforming existing tools in variant and structural variant detection.

The paper introduces SW#db, a GPU-accelerated tool for exact protein sequence similarity search, showing faster performance than existing methods on specific tasks.