Evolutionary BiologybioRxiv
A novel framework for inferring parameters of transmission from viral sequence data
C. K. Lumby, N. R. Nene, C. J. R. Illingworth
This paper introduces a framework for inferring viral transmission parameters from sequence data, showing that 2-6 viruses typically initiate infection and demonstrating the impact of selection on transmission inferences.
DOI 10.1371/journal.pgen.1007718