Author

Nicole M. Davis

Stanford Medicine

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Bioinformatics· 1

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Organism:human· 1 Assay:metagenomics· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

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Benjamin J. CallahaniD· 1 shared David A. RelmaniD· 1 shared Diana M. ProctoriD· 1 shared Susan HolmesiD· 1 shared

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2018-2018 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Benjamin J. CallahanORCID

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1 paper

Recent·Most cited

BioinformaticsMicrobiomePeer-reviewedDec 1, 2018

✦ In-depth digest

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Nicole M. Davis, Diana M. Proctor, Susan Holmes…·Benjamin J. Callahan

decontam, an R package, classifies contaminant sequences in marker-gene and metagenomic data by their inverse frequency-DNA concentration relationship and higher prevalence in negative controls.

3,494 citationstop 1%

humanbacteria (other)

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