Author

P. P. Vaidyanathan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

D. Herschlag· 2 shared I. Jarmoskaite· 2 shared K. Kappel· 2 shared R. Das· 2 shared S. K. Denny· 2 shared W. J. Greenleaf· 2 shared W. R. Becker· 2 shared C. J. Layton· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBiophysics

D. Herschlag

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintMar 8, 2019

Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding

W. R. Becker, I. Jarmoskaite, K. Kappel…·D. Herschlag

The paper quantitatively tests RNA secondary structure prediction algorithms using RNA-MaP, revealing significant deviations between predictions and experimental stabilities.

DOI 10.1101/571588

bulk RNA-seqexperimental assay

𝕏 PostBluesky

BiochemistrybioRxivAug 29, 2018

A quantitative and predictive model for RNA binding by human Pumilio proteins

I. Jarmoskaite, S. K. Denny, P. P. Vaidyanathan…·D. Herschlag

The paper develops a predictive model for RNA binding by human PUM1 and PUM2 using RNA-MaP data, showing residue flipping and positional coupling, and validates it against in vivo crosslinking data.

DOI 10.1016/j.molcel.2019.04.012

humanbulk RNA-seq

𝕏 PostBluesky