The paper develops the Maize PeptideAtlas resource to analyze maize proteomes using MS/MS data, identifying peptides and proteins across diverse genetic backgrounds and conditions.

bioRxiv · Dec 21, 2023 · PreprintPlant Biology

Converging paths: Harnessing ensemble modelling to predict human wild pig conflict risk zones in Tamil Nadu, India

T. T. Shameer, P. Routray, U. A, N. Ranjan, M. G. Ganesan, A. Manimozhi, D. V. Kumari

This study predicts human-wild pig conflict risk zones in Tamil Nadu using ensemble modelling, identifying key factors like human modification and temperature.

bioRxiv · Dec 20, 2023 · PreprintEcology

Mapping the Arabidopsis thaliana proteome in PeptideAtlas and the nature of the unobserved (dark) proteome; strategies towards a complete proteome

K. J. van Wijk, T. Leppert, Z. Sun, A. Kearly, M. Li, L. Mendoza, I. Guzchenko, E. debley, G. Sauermann, P. Routray, S. Malhotra, A. D. L. Nelson, Q. Sun, E. W. Deutsch

This paper updates the Arabidopsis thaliana PeptideAtlas proteomics resource, identifies 78.6% of the predicted proteome, and uses a machine learning model to predict the dark proteome.

bioRxiv · Jun 1, 2023 · PreprintPlant Biology

Differential Boric Acid and Water Transport in Type I and Type II Pores of Arabidopsis Nodulin 26-Intrinsic Protein

Z. G. Beamer, P. Routray, R. Agarwal, T. Li, K. M. Gibson, K. E. Ostrouchov, J. C. Smith, D. M. Roberts

This study compares boric acid and water transport in Arabidopsis NIP I and II proteins, showing differences linked to the ar/R filter's helix 2 amino acid.

bioRxiv · Oct 5, 2022 · PreprintBiochemistry

The Arabidopsis thaliana NIP2;1 Lactic Acid Channel promotes Plant Survival Under Low Oxygen Stress

Z. Beamer, P. Routray, W.-G. Choi, M. K. Spangler, A. Lokdarshi, D. M. Roberts

The paper shows that NIP2;1 facilitates lactate release from roots during hypoxia, improving plant survival and regulating lactate metabolism.

bioRxiv · Aug 3, 2020Plant Biology