Author

P. Söderhjelm

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Research Focus:protein folding & dynamics· 2 Assay:protein structure· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1

Frequent Co-Authors

M. Kulkarni· 1 shared S. Bhakat· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

2 top collaborators · 0 mutual co-author links

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1 shared paperBiophysics

M. Kulkarni

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintMay 19, 2022

Computational modelling of local fluctuations causing transient solvent exposure of protein amides

S. Bhakat, P. Söderhjelm

The paper analyzes a long MD simulation of BPTI to study the relationship between hydrogen exchange and protein dynamics, finding that exchange-competent configurations arise from transient broken states.

DOI 10.1101/2022.05.19.492675

protein structurestatistical model

𝕏 PostBluesky

BiophysicsbioRxivPreprintJan 7, 2021

Free Energy Landscape and Rate Estimation of the Aromatic Ring Flips in Basic Pancreatic Trypsin Inhibitor Using Metadynamics

P. Söderhjelm, M. Kulkarni

This study uses metadynamics to estimate ring-flip rates of aromatic residues in BPTI and identifies limitations of using chi2 as a sole collective variable.

DOI 10.1101/2021.01.07.425261

protein structuredeep learning

𝕏 PostBluesky